classActInhRevKinetic
Extends from ADGenKinetics.Derivatives.Reactions.convenience.dynamic.intermidiate.BasicRevReaction (basic declaration of a reaction ), ADGenKinetics.Derivatives.Reactions.convenience.dynamic.intermidiate.ReactionActivation (Interface for activating a reaction), ADGenKinetics.Derivatives.Reactions.convenience.dynamic.intermidiate.ReactionInhibition (Inhibition influencing a reaction).
Parameters
| Type | Name | Default | Description |
|---|---|---|---|
| Integer | NS (from ReactionDimension) | 1 | number of substrates |
| Units.StoichiometricCoef[NS] | n_S (from ReactionDimension) | ones(NS) | stoichiometry of all subtrates |
| Integer | NP (from ReactionDimension) | 1 | number of products |
| Units.StoichiometricCoef[NP] | n_P (from ReactionDimension) | ones(NP) | stoichiometry of all products |
| Units.ReactionCoef | Vfwdmax (from ReactionReversibility) | 1 | maximal forward reaction rate |
| Units.AffinityConst[NS] | KmS (from BasicIrrReaction) | ones(NS) | Affinity constants of the substrate nodes |
| Real[NS] | OOKmS (from BasicIrrReaction) | {1.0/KmS[i] for i in 1:NS} | |
| Units.ReactionCoef | Vbwdmax (from TwoWay) | 1 | backward maximal reaction rate |
| Units.AffinityConst[NP] | KmP (from BasicRevReaction) | ones(NP) | Affinity constants of the product node |
| Integer | NA (from ReactionActivation) | 1 | number of Metabolites activating the reaction |
| Units.AffinityConst[NA] | KA (from ReactionActivation) | ones(NA) | activation constants |
| Integer | NI (from ReactionInhibition) | 1 | number of Metabolites inhibiting the reaction |
| Units.AffinityConst[NI] | KI (from ReactionInhibition) | ones(NI) | Affinity constant of the Inhibitors |
Connectors
| Type | Name | Default | Description |
|---|---|---|---|
| ADGenKinetics.Interfaces.ChemicalPort_S[NS] | rc_S (from BasicReaction) | connection to substrates | |
| ADGenKinetics.Interfaces.ChemicalPort_P[NP] | rc_P (from BasicReaction) | connection to product | |
| ADGenKinetics.Interfaces.ModifierChemicalPort_A[NA] | mc_A (from ReactionActivation) | connectors to the activating node | |
| ADGenKinetics.Interfaces.ModifierChemicalPort_I[NI] | mc_I (from ReactionInhibition) |
Components
| Type | Name | Default | Description |
|---|---|---|---|
| Units.VolumetricReactionRate | v (from BasicReaction) | ||
| Real | S1 (from BasicIrrReaction) | ||
| Real | S2 (from BasicIrrReaction) | ||
| Real | P1 (from BasicRevReaction) | ||
| Real | P2 (from BasicRevReaction) | ||
| Real | A (from ReactionActivation) | activation term | |
| Real | I (from ReactionInhibition) | Inhibition term in the corresponding kinetics |