This package contains partial reaction models that can be used as templates when composing new reactions. In fact all reactions found in the Reactions are based on these partial reaction models. All reactions need at least one substrate and at least one product. This package contains base classes for any combination of substrates and products for reversible as well as irreversible reactions, as illustrated in Figure 1. The first letter in the reaction name indicates the number of substrates, and the second the number of products. Finally, the third letter indicates if the reaction is reversible (r) or irreversible (i). All these information is also illustrated by the icon.
Name | Description |
---|---|
Modifiers | Partial models of modifiers to reactions |
Basics | Basic properties of reactions |
Uur | Uni-Uni reversible reaction |
Uui | Uni-Uni irreversible reaction |
Utr | Uni-Tri reversible reaction |
Uti | Uni-Tri irreversible reaction |
Ubr | Uni-Bi reversible reaction |
Ubi | Uni-Bi irreversible reaction |
Tur | Tri-Uni reversible reaction |
Tui | Tri-Uni irreversible reaction |
Ttr | Tri-Tri reversible reaction |
Tti | Tri-Tri irreversible reaction |
Tbr | Tri-Bi reversible reaction |
Tbi | Tri-Bi irreversible reaction |
Bur | Bi-Uni reversible reaction |
Bui | Bi-Uni irreversible reaction |
Btr | Bi-Tri reversible reaction |
Bti | Bi-Tri irreversible reaction |
Bbr | Bi-Bi reversible reaction |
Bbi | Bi-Bi irreversible reaction |
Qbi | Quad-Bi irreversible reaction |
Qbr | Quad-Bi reversible reaction |
Qti | Quad-Tri irreversible reaction |
Qtr | Quad-Tri reversible reaction |
Qui | Quad-Uni irreversible reaction |
Qur | Quad-Uni reversible reaction |
Qqi | Quad-Quad irreversible reaction |
Qqr | Quad-Quad reversible reaction |
Uqr | |
Uqi | Uni-Quad irreversible reaction |
Bqi | Bi-Quad irreversible reaction |
Bqr | Bi-Quad reversible reaction |
Tqr | Tri-Quad reversible reaction |
Tqi | Tri-Quad irreversible reaction |
Mmi | Multi-Multi irreversible reaction |
Bmi | Bi-Multi irreversible reaction |
Qmi | Quad-Multi irreversible reaction |
Tmi | Tri-Multi irreversible reaction |
Umi | Uni-Multi irreversible reaction |
Mqi | Multi-Quad irreversible reaction |
Mti | Multi-Tri irreversible reaction |
Mbi | Multi-Bi irreversible reaction |
Mui | Multi-Uni irreversible reaction |
Mbr | Multi-Bi reversible reaction |
Mmr | Multi-Multi reversible reaction |
Mqr | Multi-Quad reversible reaction |
Mtr | Multi-Tri reversible reaction |
Mur | Multi-Uni reversible reaction |
Umr | Uni-Multi reversible reaction |
Bmr | Bi-Multi reversible reaction |
Qmr | Quad-Multi reversible reaction |
Tmr | Tri-Multi reversible reaction |