Directory testsuite/libraries/biochem/

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Most Recent Commits

alash325 2012-10-08 11:17 Rev.: 13242

-- testsuite/3rdparty/AVM + testsuite/3rdparty/ThermoSysPro are temporarily moved to testsuite directory + testsiuite/Libraries + testsuite/mofiles + testsuite/3rdparty are deleted from SVN

0 lines of code changed in 12 files:

• testsuite/libraries/biochem: BiochemModels.mos (del), ContainerSimple.mo (del), ContainerTotal.mo (del), CytosolTotal.mo (del), EnzMM.mos (del), Glycolysis.mos (del), InsulinSignaling_Sedaghat.mos (del), Makefile (del), UniBi.mos (del), UniUni.mos (del), extra_cellularTotal.mo (del), rtest (del)

Frenkel TUD 2012-06-28 16:38 Rev.: 12231

- fix tests

24 lines of code changed in 3 files:

• testsuite/libraries/biochem: BiochemModels.mos (+22 -22), Glycolysis.mos (+1 -1), InsulinSignaling_Sedaghat.mos (+1 -1)

perost 2012-05-22 11:09 Rev.: 11934

- Cleaned up checking of connector types and added warning for connecting two
sources.
- Moved visibility attribute from DAE.Var to DAE.Attributes.
- Removed direction prefix from components created by expandable connections,
since we can't determine them reliably yet.
- Other minor fixes to connections.

41 lines of code changed in 1 file:

• testsuite/libraries/biochem: BiochemModels.mos (+41 -3)

perost 2012-05-10 14:06 Rev.: 11885

- Implemented a new template based expression dumping.
- Updated test suite.

150 lines of code changed in 6 files:

• testsuite/libraries/biochem: BiochemModels.mos (+87 -87), EnzMM.mos (+1 -1), Glycolysis.mos (+12 -12), InsulinSignaling_Sedaghat.mos (+10 -10), UniBi.mos (+20 -20), UniUni.mos (+20 -20)

sjoelund.se 2012-04-04 11:47 Rev.: 11650

- Changed the Dependency+SCode+Inst calls everywhere to:
+ CevalScript.runFrontEnd(...), which does more error-checking
- Removed Inst.{instantiate,instProgram} as they are not needed (they were used to inst the last class of the program; which can be performed by asking for the last class of the program and instantiating that)

0 lines of code changed in 1 file:

• testsuite/libraries/biochem: BiochemModels.mos (-2)

sjoelund.se 2012-03-26 15:42 Rev.: 11548

- Conversion to UTF-8

22 lines of code changed in 3 files:

• testsuite/libraries/biochem: ContainerTotal.mo (+7 -7), CytosolTotal.mo (+7 -7), extra_cellularTotal.mo (+8 -8)

sjoelund.se 2012-03-09 14:39 Rev.: 11354

- Expected output
- Removed support for type-conversion from integer to enum
* Note: Integer literal to enum is still in use. It will be the next to go, but MSL needs some more updates

18 lines of code changed in 6 files:

• testsuite/libraries/biochem: BiochemModels.mos (+2 -28), EnzMM.mos (-1), Glycolysis.mos (-1), InsulinSignaling_Sedaghat.mos (+16 -18), UniBi.mos (-1), UniUni.mos (-1)

mahge930 2012-03-01 22:48 Rev.: 11260

+ The test-suite makefile now contain DEPENDENCIES. This are the files that are needed for the test cases.
+ "make clean" or (make -j clean) will clean the test-suite. i.e. all files that are not listed as DEPENDENCIES will be cleaned.
For OMDEV/MINGW ppl (linux already has partest)
+ "make threaded" will clean and then run the test-suite with 5 threads (my pc has 4 cores so :) ). (or just use "make -jN")
- 'msl31simulation.log' and 'msl31mediasimulation.log' still give problems with multiple threads. Very strange problem since the
output matches exactly with the expected but for some reason it is compared with outputs from another file. But For now this might help a bit.

Normal test-suite operation is not affected in anyway as far as I can tell. (Just some additions)

30 lines of code changed in 1 file:

• testsuite/libraries/biochem: Makefile (+30 -4)

sjoelund.se 2011-11-29 11:51 Rev.: 10594

- Fix ExpressionDump: -(a+b) is now printed correctly (previously was printed as -a+b)

38 lines of code changed in 3 files:

• testsuite/libraries/biochem: BiochemModels.mos (+26 -26), Glycolysis.mos (+2 -2), InsulinSignaling_Sedaghat.mos (+10 -10)

adrpo 2011-11-15 12:44 Rev.: 10515

- include the modifiers and dimensions in the dependency analysis in Inst.instElementList
- move annotation checking functions from DAEUtil to SCode.
- convert type of the Value in the binding if needed (to get rid of things like min = 0, instead of min = 0.0)
- in partial instantiation disregard parameters, instantiate only constants.
- rename the really bad name "subs" to restCref in Static.elabCrefSubs.
- clear errors when loadingFileInteractiveQualified API and parseFile API
- added vaporizing.mo test

- a LOT of tests have changed
- small fixes to tools/validatetest/validatetest.pl

1764 lines of code changed in 6 files:

• testsuite/libraries/biochem: BiochemModels.mos (+958 -992), EnzMM.mos (+10 -10), Glycolysis.mos (+57 -57), InsulinSignaling_Sedaghat.mos (+51 -51), UniBi.mos (+384 -384), UniUni.mos (+304 -304)

sjoelund.se 2011-11-15 10:11 Rev.: 10509

- Expected output

1101 lines of code changed in 6 files:

• testsuite/libraries/biochem: BiochemModels.mos (+294 -267), EnzMM.mos (+11 -10), Glycolysis.mos (+58 -57), InsulinSignaling_Sedaghat.mos (+48 -46), UniBi.mos (+385 -384), UniUni.mos (+305 -304)

perost 2011-10-26 14:42 Rev.: 10221

- Added a flag to OMC, +std, to set the Modelica language version to use. API
calls setLanguageStandard and getLanguageStandard are also implemented for
this.
- The Modelica language version is now set automatically if a specific version
of the MSL is loaded, and gives a notification if the version has changed.
- Added new package RTOptsData, which contains data types and some functions
which can't be in RTOpts since RML doesn't allow mixing external and
non-external things.
- Turned on error messages for replaceable base classes if Modelica version is
at least 3.0.
- Turned on balance checking of connectors if Modelica version is at least 3.0.
- Updated test suite, and added a new test case redeclare/ReplaceableBaseClass.

13 lines of code changed in 6 files:

• testsuite/libraries/biochem: BiochemModels.mos (+3 -2), EnzMM.mos (+2 -1), Glycolysis.mos (+2 -1), InsulinSignaling_Sedaghat.mos (+2 -1), UniBi.mos (+2 -1), UniUni.mos (+2 -1)

adrpo 2011-09-27 08:51 Rev.: 9944

- getting the testsuite closer to 100%
- more fixes are on the way for redeclares.

43 lines of code changed in 1 file:

• testsuite/libraries/biochem: BiochemModels.mos (+43 -43)

perost 2011-09-23 11:53 Rev.: 9908

- Moved list functions from Util to a new List package.

54 lines of code changed in 2 files:

• testsuite/libraries/biochem: UniBi.mos (+36 -36), UniUni.mos (+18 -18)

perost 2011-08-30 09:18 Rev.: 9712

- Reimplemented connection handling to be more efficient.

918 lines of code changed in 6 files:

• testsuite/libraries/biochem: BiochemModels.mos (+314 -314), EnzMM.mos (+5 -5), Glycolysis.mos (+57 -57), InsulinSignaling_Sedaghat.mos (+45 -45), UniBi.mos (+280 -280), UniUni.mos (+217 -217)

sjoelund.se 2011-05-30 13:40 Rev.: 9179

- Add simplification (e*e1)+(e*e2) => e*(e1+e2) (for +/- and swapping argument order)

1 lines of code changed in 1 file:

• testsuite/libraries/biochem: BiochemModels.mos (+1 -1)

sjoelund.se 2011-05-30 12:24 Rev.: 9178

- Changed order of some simplifications (commutative rules)

28 lines of code changed in 2 files:

• testsuite/libraries/biochem: UniBi.mos (+14 -14), UniUni.mos (+14 -14)

sjoelund.se 2011-05-30 11:26 Rev.: 9175

- Added ExpressionSimplify.simplifyBinaryCommutative
- To be used for commutative rules so we do not forget these cases in the future

2 lines of code changed in 2 files:

• testsuite/libraries/biochem: BiochemModels.mos (+1 -1), InsulinSignaling_Sedaghat.mos (+1 -1)

sjoelund.se 2011-05-24 13:45 Rev.: 9088

- Changed the installed library structure to omlibrary/Modelica 3.1 instead of omlibrary/msl31/Modelica
- Testcases now use loadModel(Modelica,{"3.1"}), etc, instead of env.vars

6 lines of code changed in 6 files:

• testsuite/libraries/biochem: BiochemModels.mos (+1 -2), EnzMM.mos (+1 -2), Glycolysis.mos (+1 -2), InsulinSignaling_Sedaghat.mos (+1 -2), UniBi.mos (+1 -2), UniUni.mos (+1 -2)

sjoelund.se 2011-05-22 12:51 Rev.: 9069

- Added rule to simplify x+x+x-x-x=x

22 lines of code changed in 4 files:

• testsuite/libraries/biochem: BiochemModels.mos (+5 -5), EnzMM.mos (+1 -1), UniBi.mos (+8 -8), UniUni.mos (+8 -8)

Frenkel TUD 2011-05-03 17:59 Rev.: 8792

- CevalSrcipt use BackendDAEOptimize.countSimpleEquations for checkModel (speedup testsuite)

27 lines of code changed in 3 files:

• testsuite/libraries/biochem: BiochemModels.mos (+24 -24), Glycolysis.mos (+1 -1), InsulinSignaling_Sedaghat.mos (+2 -2)

perost 2011-05-02 11:36 Rev.: 8768

- Enabled SCodeFlatten by default.
- Updated the test suite to comply with SCodeFlatten.

2 lines of code changed in 1 file:

• testsuite/libraries/biochem: BiochemModels.mos (+2 -30)

Frenkel TUD 2011-04-19 17:03 Rev.: 8704

- bugfix removeSimpleEquation, do not remove toplevel inputs

3 lines of code changed in 1 file:

• testsuite/libraries/biochem: BiochemModels.mos (+3 -3)

perost 2011-04-18 13:44 Rev.: 8689

- Changed Absyn.pathString to add a dot in front of fully qualified paths.
- Added Absyn.pathStringNoQual with the old pathString behaviour, and replaced
calls to pathString in some places that depended on the old behaviour of
pathString.
- Updated test suite.

6 lines of code changed in 1 file:

• testsuite/libraries/biochem: BiochemModels.mos (+6 -6)

Frenkel TUD 2011-04-14 19:09 Rev.: 8647

- BackendDAEOptimize.mo:
- remove old remove simple Equation
- add remove equal function calls equations module
- use new remove simple Equation for Linearization
- BackEnd/BackendDAEUtil.mo
- change incidenceMatrix, now it generates the incidenceMatrix and the transposed incidenceMatrix at once
- use removeFinalParameters,removeEqualFunctionCalls,removeSimpleEquations,expandDerOperator as default preOptModules
- BackendDump.mo: add function debuglst
- update testsuite

31 lines of code changed in 3 files:

• testsuite/libraries/biochem: BiochemModels.mos (+29 -29), Glycolysis.mos (+1 -1), InsulinSignaling_Sedaghat.mos (+1 -1)

sjoelund.se 2011-04-06 14:09 Rev.: 8521

- Disable running simplify after each unary elaboration
- Traverse each instantiated equation using simplify1
- cevalIfConstant on VAR variability expressions now does simplify1

5 lines of code changed in 1 file:

• testsuite/libraries/biochem: BiochemModels.mos (+5 -5)

sjoelund.se 2011-04-05 09:45 Rev.: 8495

- Changed simplify of LUNARY and LBINARY (we now only simplify these at the end; i.e. in the equations and bindings - not while doing static elaboration of the expression)

51 lines of code changed in 4 files:

• testsuite/libraries/biochem: BiochemModels.mos (+22 -22), EnzMM.mos (+1 -1), UniBi.mos (+14 -14), UniUni.mos (+14 -14)

perost 2011-03-16 15:28 Rev.: 8252

Fixes for Media:
- Fixed Inst.makeBinding so that it correctly handles records.
- Commented out recursive calls to simplify2 in ExpressionSimplify.simplifyBinarySortConstants
and simplifyBinarySortConstantsMul, see bug 1450.
- Changed declaration of sat in Modelica.Media.Water.WaterIF97_base.BaseProperties
to be a modification instead, since it already exists as an inherited
component (see ticket 505 on the Modelica Issue Tracker).
- Updated test cases due to different simplifications.
- Added test mofiles/RecordConstant4 to test the record binding fix.

1 lines of code changed in 1 file:

• testsuite/libraries/biochem: BiochemModels.mos (+1 -1)

sjoelund.se 2011-03-04 10:22 Rev.: 8077

- Fixed line endings of several files

4606 lines of code changed in 9 files:

• testsuite/libraries/biochem: BiochemModels.mos (+1), ContainerSimple.mo (+485 -484), ContainerTotal.mo (new), CytosolTotal.mo (new), extra_cellularTotal.mo (new)

perost 2011-02-18 15:27 Rev.: 7965

- Added new module SCodeDependency for SCode dependency analysis.
- Added new debugflag +d=scodeFlatten to enable SCode flattening.
- Removed environment path when printing error for components with same name,
since it sometimes printed nonsense paths otherwise.
- Updated test cases that changed due to above change.
- Renamed absynExpOption to binding in SCode.Mod.
- Added function Util.listMap02.
- Added some more builtin Modelica functions (assert, constrain).

17 lines of code changed in 1 file:

• testsuite/libraries/biochem: BiochemModels.mos (+17 -17)

sjoelund.se 2011-02-06 21:48 Rev.: 7878

- Expected output

3006 lines of code changed in 6 files:

• testsuite/libraries/biochem: BiochemModels.mos (+880 -880), EnzMM.mos (+26 -26), Glycolysis.mos (+183 -183), InsulinSignaling_Sedaghat.mos (+155 -155), UniBi.mos (+981 -981), UniUni.mos (+781 -781)

adrpo 2010-11-27 22:54 Rev.: 7222

- remove spaces in DAE.ASUB printing (to make it exactly as ComponentReference)
- got rid of most of Util.boolAndList which were not exactly needed
- added more specific map functions that can check global list properties
- updated tests due to changes in DAE.ASUB printing
- changed the annoying "Modelica specifications" to "Modelica specification" in Error.mo and tests
- get rid of warning due to missing newline at the end of Compiler/OpenModelicaBootstrappingHeader.h

17 lines of code changed in 1 file:

• testsuite/libraries/biochem: BiochemModels.mos (+17 -17)

perost 2010-11-26 11:57 Rev.: 7197

- Fixed invalid propagation of connection sets from redeclared components
(commit 7185 to OpenModelica-1.5.1-Maintenance branch).
- Take face of connector components into account when connecting potential
connectors (commit 7173 to OpenModelica-1.5.1-Maintenance branch).
- Optimized findEquSet and findFlowSet to terminate earlier in some cases.
- Cleaned up ConnectionGraph.
- Cleaned up connection handling in InstSection.
- Updated test cases that changes due to equation ordering changes.

124 lines of code changed in 2 files:

• testsuite/libraries/biochem: BiochemModels.mos (+124 -124)

sjoelund.se 2010-09-23 15:45 Rev.: 6191

- Fix dependency makefile in the testsuite (so it doesn't cause the testsuite to fail)

0 lines of code changed in 1 file:

• testsuite/libraries/biochem: Makefile (-7)

sjoelund.se 2010-09-23 12:22 Rev.: 6190

- Fix biochem testcases on Linux

5 lines of code changed in 5 files:

• testsuite/libraries/biochem: EnzMM.mos (+1), Glycolysis.mos (+1), InsulinSignaling_Sedaghat.mos (+1), UniBi.mos (+1), UniUni.mos (+1)

sjoelund.se 2010-09-22 18:07 Rev.: 6179

- Added /libraries - a common place for the Modelica libraries we test OpenModelica against
- It is possible to switch between Modelica versions using the following environments:
- OPENMODELICALIBRARY=/libraries/msl221:/libraries/common
- OPENMODELICALIBRARY=/libraries/msl31:/libraries/common
- (Separate with ; on Windows platforms)
- Moved /libraries/testsuite/libraries/ ... msl221 msl31 BioChem to /libraries
- Added ModelicaAdditions, SimpleFluid to /libraries
- Updated testcases to reflect these changes (testcases that load MSL now use loadModel)

17 lines of code changed in 6 files:

• testsuite/libraries/biochem: EnzMM.mos (+2 -2), Glycolysis.mos (+2 -2), InsulinSignaling_Sedaghat.mos (+2 -2), Makefile (+7), UniBi.mos (+2 -2), UniUni.mos (+2 -2)

sjoelund.se 2010-09-21 12:34 Rev.: 6159

- Fix svn-eol-style on Makefiles

26 lines of code changed in 1 file:

• testsuite/libraries/biochem: Makefile (+26 -25)

sjoelund.se 2010-08-26 16:16 Rev.: 5959

- Changed output of a flat class from fclass to class (omc a.mo > a.mof; omc a.mof no longer causes a parsing error)
- All testcases have been updated

4 lines of code changed in 4 files:

• testsuite/libraries/biochem: EnzMM.mos (+1 -1), InsulinSignaling_Sedaghat.mos (+1 -1), UniBi.mos (+1 -1), UniUni.mos (+1 -1)

sjoelund.se 2010-05-31 09:43 Rev.: 5589

- Added Unix make target "fix-svn-eol-style"
- Fixed line ending for all .mo and .mos-files in Compiler/ and testsuite/

5 lines of code changed in 5 files:

• testsuite/libraries/biochem: EnzMM.mos (+1 -1), Glycolysis.mos (+1 -1), InsulinSignaling_Sedaghat.mos (+1 -1), UniBi.mos (+1 -1), UniUni.mos (+1 -1)

adrpo 2010-04-13 05:10 Rev.: 5297

- small numerical difference due to rounding

1 lines of code changed in 1 file:

• testsuite/libraries/biochem: InsulinSignaling_Sedaghat.mos (+1 -1)

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